2010
· Eslahchi C, Pezeshk H, Sadeghi M,
Giabbanelli P. J, Movahedi F. and Dabbaghian V.
A Probabilistic Model for the Spread of HIV Infection among Injection Drug Users. To
appear in Journal of world Academic Press.
· Ejlali
N, Pezeshk H.
A Bidirectional Hidden Markov Model in Linear Memory. To
appear in Journal of Statistical Science.
· Changiz
Eslahchi, Mahnaz Habibi, Reza Hassanzadeh and Ehsan Mottaghi.
MC-Net: A method for the construction of phylogenetic networks based on the
Monte-Carlo method.
Accepted in BMC
Evolutionary Biology.
· Pezeshk
H,
Naghizadeh S, Malekpour S. A, Eslahchi C, Sadeghi M. A Modified Bidirectional
Hidden Markov Model and its Application in Protein Secondary Structure Prediction.
Proceeding of the Second Interaction Conference on Advanced
Computer Control (ICACC 2010), Shenyang, China 27th-29th March 2010, pp 535-538.
·
Arab S, Sadeghi M, Eslahchi C, Pezeshk H.
A pairwise residue contact area-based mean force potential for
discrimination of native protein structure.
BMC Bioinformatics,
2010;
11:16
doi:10.1186/1471-2105-11-16
2009
·
Katanforoush A, Sadeghi M, Pezeshk H, Elahi E. Global haplotype partitioning for maximal associated SNP pairs.
BMC Bioinformatics,
2009; 10(1): 269.
·
Malekpour S. A., Naghizadeh S.,
Pezeshk, H., Sadeghi,
M., Eslahchi, C. A Segmental Semi Markov Model for Protein Secondary
Structure Prediction.
Mathematical Biosciences,
2009; 221: 130-135
·
Mirzaee M., Eslahchi C., Pezeshk H., Sadeghi M.
A Distance Dependent Atomic Knowledge Based Potential and Force for
Discrimination of Native Structures from Decoys.
PROTEINS, 2009;
77: 454-463
·
Zare-Mirakabad F., Ahrabian H., Sadeghi M., Nowzari-Dalini A., Goliaei B. New
scoring schema for finding motifs in DNA Sequences, BMC Bioinformatics 2009,
10:93
·
Zare-Mirakabad F., Davoodi P., Ahrabian H., Nowzari-Dalini A., Sadeghi M.,
Goliaei B. Finding Motifs Based on Suffix Trie, Advanced Modeling and
Optimization, 2009, 11(2), 177-194
·
Zare-Mirakabad F., Ahrabian H., Sadeghi M., Hashemifar S., Nowzari-Dalini A.,
Goliaei B. Genetic algorithm for dyad pattern finding in DNA sequences,
Genes Genet. Syst., 2009, 84.
·
Eslahchi C., Pezeshk H., Sadeghi
M., Sheikh attar A. LIBRA:
A de Novo Motif Finding in Promoter Sequences Based on Linear Algebra.
Proceedings of world Academy of Science, Engineering and Technology, 2009, 37:
507-512
·
Mirzaei
H., Ahmadian S., Mahabadi S., Sadeghi M., Eslahchi C., Pezeshk H.
An
Algorithm for Construction of all Perfect Phylogeny Matrices. Match, 2009,
62, 2: 251-259
·
Kargar
M., Poormohammadi H., Pirhaji L., Sadeghi M., Pezeshk H., Eslahchi C.
Enhanced Evolutionary and Heuristic Algorithms for Haplotype Reconstruction
Problem Using Minimum Error Correction Model.
Match,
2009, 62, 2: 261-274
·
Eslahchi C., Pezeshk H.,
Sadeghi M., Rahimi A. M., Maboudi Afkham H., Arab S.
Ston: A Novel Method for Protein three-dimensional Structure
Comparison. Computers in Biology and
Medicine 2009, 39, 2: 166-172.
·
Malekpour S. A., Naghizadeh S.,
Pezeshk, H., Sadeghi,
M., Eslahchi, C.
Protein Secondary Structure Prediction Using three Neural Networks and a
Segmental Semi Markov Model.
Mathematical Biosciences 2009, 217, 2: 145-150.
·
Zare-Mirakabad F., Sadeghi M., Ahrabian H., Nowzari-Dalini.
RNAComp: A New Method for RNA Secondary Structure Alignment.
MATCH
Communications in Mathematical and Computer Chemistry 2009, 61, 3: 789-816.
2008
·
Hosseini S. R., Sadeghi, M., Pezeshk H., Eslahchi C., Habibi M.
PROSIGN: A
Method for Protein Secondary Structure Assignment Based on Three-Dimensional
Coordinates of Cosecutive Ca atoms. Computational Biology and Chemistry
2008, 32, 6: 406-411.
·
Naghizadeh S., Pezeshk H., Sadeghi M., Mohammadzadeh M., Eslahchi C.
A Modification on a
Left-to-Right and Right-to-Left Dependency Model for Secondary Structure
Prediction.
Journal of Science, University
of Tehran 2008, 34, 3, 61-66.
·
Habibi M.,
Eslahchi C., Pezeshk H., Sadeghi M.
An Information theoritical Approch to Secondary
Structure Assignment.
Journal of Science, University
of Tehran 2008, 34, 3, 41-48.
·
Momen-Roknabadi A., Sadeghi M., Pezeshk H., Marashi S. A.
Impact of Residue Accessible Surface Area on the
Prediction of Protein Secondary Structures.
BMC Bioinformatics 2008, 9:357.
·
Sheari A, Kargar M, Katanforoush A, Arab S, Sadeghi M, Pezeshk H, Eslahchi C,
Marashi S.A. A Tale of two Symmetrical Tails: Structural and Functional
Charateristics of Palindroms in Proteins. BMC Bioinformatics 2008,9:274.
·
Pirhaji L, Kargar M, Sheari A, Poormohamadi H, Sadeghi M, Pezeshk H, Eslahchi C.
The Performance of chi-square Test and complexity Measures for Signal
Recognition in Biological Sequences. Journal of Theoretical Biology. (2008)
vol. 251, 380-387.
·
Farzadfard F, Gharaei N, Pezeshk H, Marashi SA.
β-sheet capping:
Signals that Initiate and Terminate β-sheet Formation. Journal of Structural
Biology. 2008, 101-110.
2007
·
Shahriar Arab, Farzad Didehvar, Changiz Eslahchi, Mehdi Sadeghi
Helix segment
assignment in proteins using fuzzy logic
,
IRANIAN JOURNAL of BIOTECHNOLOGY, 2007,
Vol. 5, 93-99.
·
Eslahchi C, Sadeghi M, Pezeshk H, Kargar M, Poormohamadi H. Haplotyping
Problem, A Clustering Approach. American Institute of Physics Conference
Proceedings – September 2007, 936:185-190.
·
Zarei R, Arab S, Sadeghi M.
A Method for Protein Accessibility Prediction
Based on Residue types and Conformational States. Computational Biology and
Chemistry 2007, 31: 384-388.
·
Marashi SA, Kargar M, Katanforoush A, Abolhasani H,
Sadeghi M. Evolution of
‘Ligand-Diffusion Chreodes’ on protein – surface Models: A Genetic Algorithm
study. Chemistry and Biodivrsity. 2007, 4: 2766-2771.
·
Goodarzi H, Katanforoush A, Torabi N, Shateri Najafabadi H.
Solvent
Accessibility, Residue Charge and Residue Volume, the three Ingredients of a
Robust Amino Acid Substitution Matrix. Journal of Theoretical Biology 2007,
245: 715-725.
·
Marashi SA, Behrouzi R, Pezeshk H. Adaptation of proteins to different
environments: A comparison of proteome structural properties in Bacillus
subtilis and Escherichia coli. J Theor Biol. 2007; 244(1):127-32.
