Monte-Carlo Quartet Network

Bioinformatics Research Group @ IPM
 

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School of Computer Science @ IPM

Institute for Studies in Theoretical Physics and Mathematics (IPM)

MCQ-Net is a heuristic algorithm based on the simulated annealing as a method for constructing phylogenetic networks from weighted quartets. MCQ-Net finds a circular ordering for taxa and then extracts splits from the circular ordering and uses non-negative least squares for weighting splits. One can use SplitsTree4 program to draw phylogenetic networks from weighted splits.

You can download program here

Bioinformatics Research Group

School of Computer Sciences

Institute for Studies in Theoretical Physics and Mathematics (IPM)
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