Surfield


Bioinformatics Research Group @ IPM
Surfield	Surface Force field
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	Considering energy function to detect a correct protein fold from incorrect ones is very important for protein structure prediction and protein folding. Knowledge-based mean force potentials are certainly the most popular kind of interaction function for protein threading and derived from statistical analyses of interacting groups in experimentally determined protein structures. We developed a new approach to calculate a knowledge-based potential of mean-force using pairwise residue contact area.
	The web base program will be upload in a few days. You can download the executable program here.
	Refrence: Arab S, Sadeghi M, Eslahchi C, Pezeshk H. A pairwise residue contact area-based mean force potential for discrimination of native protein structure. BMC Bioinformatics, 2010; 11:16 doi:10.1186/1471-2105-11-16

Last modify on: January 19, 2011	Bioinformatics Research Group School of Computer Sciences Institute for Studies in Theoretical Physics and Mathematics (IPM) All rights reserved.	Contact S. Shahriar Arab: shahriar@ipm.ir