Bioinformatics Research Group @ IPM
	MC.net	Monte-Carlo Network
	Bioinformatics Research Group @ IPM     STON FAssign FRRP PaperHap GPMAP ASILA LIBRA     Research Areas Members Publications Software Calendar How to contact us! Useful links   School of Computer Science @ IPM   Institute for Studies in Theoretical Physics and Mathematics (IPM)
		Phylogenetic networks are a generalization of phylogenetic trees that allow the representation of conflicting signals or alternative evolutionary histories in a single diagram. There are several methods for constructing these networks. MC-Net is A method for the construction of phylogenetic networks based on Monte-Carlo method. MC-Net finds a circular ordering for taxa, based on Monte-Carlo with simulated annealing, it then extracts splits from the circular ordering and uses non-negative least squares for weighting splits. One can use SplitsTree program to draw phylogenetic networks from weighted splits.     You can download program here
		Bioinformatics Research Group School of Computer Sciences Institute for Studies in Theoretical Physics and Mathematics (IPM) All rights reserved.
			Contact S. Shahriar Arab: shahriar@mail.ipm.ir